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Fix component exception (#1603)

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### What problem does this PR solve?


### Type of change

- [x] Bug Fix (non-breaking change which fixes an issue)
This commit is contained in:
H
2024-07-19 13:36:45 +08:00
committed by GitHub
parent c0090a1b4f
commit 915354bec9
5 changed files with 61 additions and 48 deletions
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20
graph/component/pubmed.py
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@@ -46,14 +46,18 @@ class PubMed(ComponentBase, ABC):
if not ans:
return PubMed.be_output("")
Entrez.email = self._param.email
pubmedids = Entrez.read(Entrez.esearch(db='pubmed', retmax=self._param.top_n, term=ans))['IdList']
pubmedcnt = ET.fromstring(
Entrez.efetch(db='pubmed', id=",".join(pubmedids), retmode="xml").read().decode("utf-8"))
pubmed_res = [{"content": 'Title:' + child.find("MedlineCitation").find("Article").find(
"ArticleTitle").text + '\nUrl:<a href=" https://pubmed.ncbi.nlm.nih.gov/' + child.find(
"MedlineCitation").find("PMID").text + '">' + '</a>\n' + 'Abstract:' + child.find("MedlineCitation").find(
"Article").find("Abstract").find("AbstractText").text} for child in pubmedcnt.findall("PubmedArticle")]
try:
Entrez.email = self._param.email
pubmedids = Entrez.read(Entrez.esearch(db='pubmed', retmax=self._param.top_n, term=ans))['IdList']
pubmedcnt = ET.fromstring(
Entrez.efetch(db='pubmed', id=",".join(pubmedids), retmode="xml").read().decode("utf-8"))
pubmed_res = [{"content": 'Title:' + child.find("MedlineCitation").find("Article").find(
"ArticleTitle").text + '\nUrl:<a href=" https://pubmed.ncbi.nlm.nih.gov/' + child.find(
"MedlineCitation").find("PMID").text + '">' + '</a>\n' + 'Abstract:' + child.find(
"MedlineCitation").find("Article").find("Abstract").find("AbstractText").text} for child in
pubmedcnt.findall("PubmedArticle")]
except Exception as e:
return PubMed.be_output("**ERROR**: " + str(e))
if not pubmed_res:
return PubMed.be_output("")